Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs7380299 chr5:180543318 A/G 8.17E-6 503 31.73 31.27 13.83 KM Plot
THCA rs73852723 chr3:111595233 C/G 7.24E-9 494 31.75 28.23 17.77 KM Plot
THCA rs74022416 chr15:72034352 A/G 5.3E-10 493 31.47 34 20 KM Plot
THCA rs74022417 chr15:72034465 A/T 5.6E-10 492 31.47 34 20 KM Plot
THCA rs74022418 chr15:72034466 T/G 5.6E-10 492 31.47 34 20 KM Plot
THCA rs74022419 chr15:72035484 A/G 5.3E-10 493 31.47 34 20 KM Plot
THCA rs74115303 chr13:108911889 G/T 2.36E-6 496 31.45 32.03 24.63 KM Plot
THCA rs7413800 chr1:41556839 T/C 1.2E-7 502 27.33 30.48 31.92 KM Plot
THCA rs74247446 chr16:79269479 A/G 2.35E-9 485 31.5 31.33 24.17 KM Plot
THCA rs742645 chr20:47323655 G/A 4.37E-9 502 31.53 32.1 18.22 KM Plot
THCA rs74334445 chr18:13824785 G/T 1.27E-5 501 31.42 33.4 50 KM Plot
THCA rs7435601 chr4:3369645 A/G 8.15E-5 503 27.1 31.5 33.4 KM Plot
THCA rs74376228 chr10:104677662 G/C 9.15E-14 502 31.37 35.6 32.1 KM Plot
THCA rs744381 chr3:53909542 T/G 3.57E-6 495 31.6 31.77 24.75 KM Plot
THCA rs7444422 chr5:178228532 A/C 3.05E-5 499 31.47 33.97 24.9 KM Plot